Quaquaval

The best possible counters, at level 50 with perfect IVs.

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1. 1 Mewtwo (Mega Y) Mega Confusion / Psystrike Elite 55 Estimated DPS
2. 2 Rayquaza (Mega) Mega Air Slash / Dragon Ascent Elite 53 Estimated DPS
3. 3 Mewtwo (Mega X) Mega Confusion / Psystrike Elite 53 Estimated DPS
4. 4 Mewtwo Shadow Confusion / Psystrike Elite 48 Estimated DPS
5. 5 Alakazam (Mega) Mega Confusion / Psychic Elite 46 Estimated DPS
6. 6 Regieleki Lock-On / Thunder Cage Elite 46 Estimated DPS
7. 7 Sceptile (Mega) Mega Bullet Seed / Frenzy Plant Elite 42 Estimated DPS
8. 8 Thundurus (Therian) Volt Switch / Wildbolt Storm Elite 42 Estimated DPS
9. 9 Latios (Mega) Mega Zen Headbutt / Psychic 40 Estimated DPS
10. 10 Gardevoir (Mega) Mega Confusion / Psychic 41 Estimated DPS
11. 11 Rayquaza Air Slash / Dragon Ascent Elite 40 Estimated DPS
12. 12 Gallade (Mega) Mega Confusion / Psychic 41 Estimated DPS

Ranked by estimated cycle DPS (type effectiveness, STAB, the shadow bonus and the target's defense). Not a battle simulation: no dodging and no survivability, so a fragile Pokémon can rank higher here than on other sites.